Recent Publications

*Indicates Dyhrman laboratory undergraduate student authors

#Indicates Dyhrman laboratory personnel, graduate student, and postdoctoral scholar authors

Coco Koedooder, Futing Zhang, Siyuan Wang, Subhajit Basu, #Sheean T. Haley, Nikola Tolic, Carrie D. Nicora, Tijana Glavina del Rio, Sonya T. Dyhrman, Martha Gledhill, Rene M. Boiteau, Maxim Rubin-Blum, and Yeala Shaked.  (2023)  Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia. Msystems 8 (6), e00742-23

Samantha P. Setta, Sarah Lerch, Bethany D. Jenkins, Sonya T. Dyhrman, and Tatiana A. Rynearson (2023) Oligotrophic waters of the Northwest Atlantic support taxonomically diverse diatom communities that are distinct from coastal waters.  Journal of Phycology 59 (6), 1202-1216.

Mathilde Dugenne, Mary R. Gradoville, Matthew J. Church, Samuel T. Wilson, Uri Sheyn, #Matthew J. Harke, Karin M. Björkman, Nicholas J. Hawco, Annette M. Hynes, François Ribalet, David M. Karl, Edward F. DeLong, Sonya T. Dyhrman, E Virginia Armbrust, Seth John, John M. Eppley, Katie Harding, Brittany Stewart, Ana M. Cabello, Kendra A. Turk‐Kubo, Mathieu Caffin, Angelicque E. White, and Jonathan P. Zehr (2023) Nitrogen fixation in mesoscale eddies of the North Pacific Subtropical Gyre: patterns and mechanisms.  Global Biogeochemical Cycles 37 (4), e2022GB007386.

Amália Maria Sacilotto Detoni, Ajit Subramaniam, Sheean T. Haley, Sonya T. Dyhrman and Paulo H. R. Calil (2022) Cyanobacterial diazotroph distributions in the Western South Atlantic.  Frontiers in Marine Science.  doi: 10.3389/fmars.2022.856643.

Daniel Muratore, Angela K. Boysen, #Matthew J. Harke, Kevin W. Becker, John R. Casey, Sacha N. Coesel, Daniel R. Mende, Samuel T. Wilson, Frank O. Aylward, John M. Eppley, Alice Vislova, Shengyun Peng, Rogelio A. Rodriguez-Gonzalez, Stephen J. Beckett, E. Virginia Armbrust, Edward F. DeLong, David M. Karl, Angelicque E. White, Jonathan P. Zehr, Benjamin A. S. Van Mooy, Sonya T. Dyhrman, Anitra E. Ingalls, and Joshua S. Weitz (2022) Complex marine microbial communities partition metabolism of scarce resources over the diel cycle.  Nature Ecology & Evolution.  doi: 10.1038/s41559-021-01606-w

#María D. Hernández Limón, #Gwenn M. M. Hennon, #Matthew J. Harke, #Kyle R. Frischkorn, #Sheean T. Haley, Sonya T. Dyhrman (2019) Transcriptional patterns of Emiliania huxleyi in the North Pacific Subtropical Gyre reveal the daily rhythms of its metabolic potential. Environmental Microbiology.  doi:  10.1111/1462-2920.14855.

#Gwenn M. M. Hennon and Sonya T. Dyhrman (2019) Progress and promise of omics for predicting the impacts of climate change on harmful algal blooms.  Harmful Algae.  doi: 10.1016/j.hal.2019.03.005.

Anusuya Willis, Ann W. Chuang, Sonya T. Dyhrman and Michele A. Burford (2019)  Differential expression of phosphorus acquisition genes in response to phosphorus stress in two Raphidiopsis raciborskii strains.  Harmful Algae.  doi: 10.1016/j.hal.2018.12.003.

#Gwenn M. M. Hennon, *Olivia M. Williamson, #María D. Hernández Limón, #Sheean T. Haley and Sonya T. Dyhrman (2019) Non-linear physiology and gene expression responses of harmful alga Heterosigma akashiwo to rising CO2.  Protist.  doi: 10.1016/j.protis.2018.10.002.

Maria Montserrat Sala, Judith Piontek, Sonja Endres, Anna M. Romani, Sonya T. Dyhrman and Andrew Decker Steen (2019) Extracellular enzymes in aquatic environments: Exploring the link between genomic potential and biogeochemical consequences.  Frontiers in Microbiology.  doi: 10.3389/fmicb.2019.01463.

#Kyle R. Frischkorn, #Sheean T. Haley and Sonya T. Dyhrman (2019) Transcriptional and proteomic choreography under phosphorus deficiency and re-supply in the N2 fixing cyanobacterium Trichodesmium erythraeum.  Frontiers in Microbiology.  doi: 10.3389/fmicb.2019.00330.

#Louie Wurch, #Harriet Alexander, #Kyle R. Frischkorn, #Sheean T. Haley, Christopher Gobler and Sonya T. Dyhrman(2019) Transcriptional shifts highlight the role of nutrients in harmful brown tide dynamics.  Frontiers in Microbiology.  doi: 10.3389/fmicb.2019.00136.

#Matthew J. Harke, #Kyle R. Frischkorn, #Sheean T. Haley, Frank O. Aylward, Jonathan P. Zehr and Sonya T. Dyhrman (2019) Periodic and coordinated gene expression between a diazotroph and its diatom host.  The ISME Journal.  doi: 0.1038/s41396-018-0262-2.

#Kyle R. Frischkorn, #Mónica Rouco, Benjamin A. S. Van Mooy and Sonya T. Dyhrman (2018) The Trichodesmium microbiome can modulate host N2 fixation. Limnology and Oceanography Letters.  doi:  10.1002/lol2.10092.

Sarah K. Hu, Zhenfeng Liu, #Harriet Alexander, Victoria Campbell, Paige E. Connell, Sonya T. Dyhrman, Karla B. Heidelberg and David A. Caron (2018) Shifting metabolic priorities among key protistan taxa within and below the euphotic zone.  Environmental Microbiology.  doi: 10.1111/1462-2920.14259.

#Mónica Rouco, #Kyle R. Frischkorn, #Sheean T. Haley, #Harriet Alexander and Sonya T. Dyhrman (2018) Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans.  The ISME Journal. doi: 0.1038/s41396-018-0087-z.

#Kyle R. Frischkorn, #Sheean T. Haley and Sonya T. Dyhrman (2018) Coordinated gene expression between Trichodesmium and its microbiome over day–night cycles in the North Pacific Subtropical Gyre.  The ISME Journal. doi: 10.1038/s41396-017-0041-5.

#Gwenn M. M. Hennon, J. Jeffrey Morris, #Sheean T. Haley, Erik R. Zinser, Alexander R. Durrant, Elizabeth Entwistle, Terje Dokland, and Sonya T. Dyhrman (2018) The impact of elevated CO2 on Prochlorococcus and microbial interactions with ‘helper’ bacterium Alteromonas.  ISME Journal doi:10.1038/ismej.2017.189

Sonya T. Dyhrman (2018) Microbial physiological ecology of the marine phosphorus cycle.  Microbial Ecology of the Oceans.

#Sheean T. Haley, #Harriet Alexander, Andrew R. Juhl and Sonya T. Dyhrman (2017) Transcriptional response of the harmful raphidophyte Heterosigma akashiwo to nitrate and phosphate stress.  Harmful Algae  doi: 10.1016/j.hal.2017.07.001.

#Matthew J. Harke, Andrew R. Juhl, #Sheean T. Haley, #Harriet Alexander, and Sonya T. Dyhrman (2017) Conserved transcriptional responses to nutrient stress in bloom-forming algae. Frontiers in Microbiology. 8:1279. doi: 10.3389/fmicb.2017.01279.

#Kyle R. Frischkorn, #Mónica Rouco, Benjamin A. S. Van Mooy, and Sonya T. Dyhrman (2017) Epibionts dominate metabolic functional potential of Trichodesmium colonies from the oligotrophic ocean.  ISME Journal doi: 10.1038/ismej.2017.74.

Elizabeth B. Kujawinski, Krista Longnecker, #Harriet Alexander, Sonya T. Dyhrman, Cara L. Fiore, Sheean T. Haley, and Winifred M. Johnson (2017) Phosphorus availability regulates intracellular nucleotides in marine eukaryotic phytoplankton.  Limnology and Oceanography Letters.  2(4), 119-129.

Mohammad Moniruzzaman, #Louie L. Wurch, #Harriet Alexander, Sonya T. Dyhrman, Christopher J. Gobler, and Steven W. Wilhelm (2017) Virus-host relationships of marine single-celled eukaryotes resolved from metatranscriptomics.  Nature Communications. doi:10.1038/ncomms16054.

David A. Caron, #Harriet Alexander, Andrew E. Allen, John M. Archibald, E. Virginia Armbrust, Charles Bachy, Callum J. Bell, Arvind Bharti, Sonya T. Dyhrman, Stephanie M. Guida, Karla B. Heidelberg, Jonathan Z. Kaye, Julia Metzner, Sarah R. Smith, and Alexandra Z. Worden (2017) Probing the evolution, ecology and physiology of marine protists using transcriptomics.  Nature Reviews Microbiology doi:10.1038/nrmicro.2016.160.

Luke R. Chambers, Ellery D. Ingall, Emily M. Saad, Amelia F. Longo, Masayuki Takeuchi, Yuanzhi Tang, Claudia Benitez-Nelson, #Sheean T. Haley, Sonya T. Dyhrman, Jay Brandes, and Aron Stubbins (2016)  Enhanced dissolved organic matter recovery from saltwater samples with electrodialysis.  Aquatic Geochemistry  22(5-6), 555-572.

#Mónica Rouco, #Sheean T. Haley, #Harriet Alexander, Sam T. Wilson, Dave Karl, and Sonya T. Dyhrman (2016) Variable distribution of Trichodesmium clades in the North Pacific Ocean. Environmental Microbiology Reports 8(6), 1058–1066.

#Mónica Rouco, #Sheean T. Haley, and Sonya T. Dyhrman (2016) Microbial diversity within the Trichodesmium holobiont. Environmental Microbiology doi:10.1111/1462-2920.13513.

Emily M. Saad, Amelia F. Longo, Luke R. Chambers, Rixiang Huang, Claudia Benitez‐Nelson, Sonya T. Dyhrman, #Julia M. Diaz, Yuanzhi Tang, and Ellery D. Ingall (2016) Understanding marine dissolved organic matter production:  Compositional insights from axenic cultures of Thalassiosira pseudonana.  Limnology and Oceanography 61(6), 2222-2233.

Colleen M. Hansel, Carolyn Buchwald, #Julia M. Diaz, Justin E. Ossolinski, Sonya T. Dyhrman, Benjamin A. S. Van Mooy (2016) Dynamics of extracellular superoxide production by Trichodesmium colonies from the Sargasso Sea Limnology and Oceanography in press

Colleen A. Durkin, Benjamin A. S. Van Mooy, Sonya T. Dyhrman, and Ken O. Buesseler (2016) Sinking phytoplankton associated with carbon flux in the Atlantic Ocean Limnology and Oceanography.  doi:  10.1002/lno.10253.

Mary Ann Moran, Elizabeth B. Kujawinski, Aron Stubbins, Rob Fatland, Lihini I. Aluwihare, Alison Buchan, Byron C. Crump, Pieter C. Dorrestein, Sonya T. Dyhrman, Nancy Hess, Krista Longnecker, Patricia M. Medeiros, Jutta Niggemann, Ingrid Obernosterer, Daniel J. Repeta, Jacob Waldbauer (2016) Deciphering ocean carbon in a changing world. Proceedings of the National Academy of Sciences 113:3143-3151

#Julia M. Diaz, #Sheean T. Haley, Amelia F. Longo, Ellery D. Ingall, Karin M. Björkman, David M. Karl, Sonya T. Dyhrman (2016) Polyphosphate content and dynamics at Station Aloha, North Pacific Subtropical Gyre Limnology and Oceanography 61:227-239

#Harriet Alexander, #Mónica Rouco, #Sheean T. Haley, Samuel T. Wilson, David M. Karl, and Sonya T. Dyhrman (2015) Functional group specific traits drive shift in ecosystem state in the oligotrophic ocean. Proceedings of the National Academy of Sciences 112:E5972-E5979

Elise M. Olson, Dennis J. McGillicuddy Jr., Sonya T. Dyhrman, John B. Waterbury, Cabell S. Davis, Andrew R. Solow (2015) The depth-distribution of nitrogen fixation by Trichodesmium spp. colonies in the tropical-subtropical North Atlantic. Deep Sea Research I 104:72-91

Samuel T. Wilson, Benedetto Barone, Francois Ascani, Robert R. Bidigare, Matthew J. Church, Daniela A. del Valle, Sonya T. Dyhrman, Sara Ferrón, Jessica N. Fitzsimmons, Laurie W. Juranek, Zbigniew S. Kolber, Ricardo M. Letelier, Sandra Martínez-Garcia, David P. Nicholson, Kelvin J. Richards, Yoshimi M. Rii, #Mónica Rouco, Donn A. Viviani, Angelique E. White, Jonathan P. Zehr and David M. Karl  (2015) Short-term variability in euphotic zone biogeochemistry and primary productivity at Station Aloha: A case study of summer 2012 Global Biogeochemical Cycles 29:1145-1164

Stephanie Dutkiewicz, Jeffrey Morris, Michael J. Follows, Jeffery Scott, Orly Levitan, Sonya T. Dyhrman, Ilana Berman-Frank (2015) Ocean acidification impacts the structure of future phytoplankton communities. Nature Climate Change 5:1002-1006

#Harriet Alexander, Bethany D. Jenkins, Tatiana A. Rynearson, and Sonya T. Dyhrman (2015) Metatranscriptome analyses indicate resource partitioning between diatoms in the field. Proceedings of the National Academy of Sciences 112:E2182–E2190

Benjamin A. S. Van Mooy, Andrew Krupke, Sonya T. Dyhrman, Helen F. Fredricks, #Kyle F. Frischkorn, Justin Ossolinski, Daniel J. Repeta, #Mónica Rouco, Jeffery D. Seewald, and Sean P. Sylva (2015) Chemical reduction of phosphate in the ocean. Science 348:783-785

Elise M. Olson, Dennis J. McGillicuddy Jr., Glenn R. Flierl, Cabell S. Davis, Sonya T. Dyhrman and John B. Waterbury (2015) Mesoscale eddies and Trichodesmium spp. distributions in the southwestern North Atlantic. Journal of Geophysical Research: Oceans 120:4129-4150 doi:10.1002/2015JC010728